Scaffold Ga0136449

Basic Information
Taxon OID	3300010379 Open in IMG/M
Scaffold ID	Ga0136449_100256210 Open in IMG/M
Source Dataset Name	Sb_50d combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010379 Open in IMG/M

Scaffold ID

Ga0136449_100256210 Open in IMG/M

Source Dataset Name

Sb_50d combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3244
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3244

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis algeriensis	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis algeriensis

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.1318

Long. (^o)

11.881

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y
F006575	Metagenome / Metatranscriptome	370	Y
F057529	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_1002562101	F057529	N/A	AESDSLLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSTASLYAFAQEAFSSGR*
Ga0136449_1002562102	F006575	GGAG	MTEQELATSPYLSLRQAVRPAIIAHWLLAGDQERAGKLAAECEDLLAFTRELLKAAGRVRILAGPAPSAGMPDSGESGGDRQAQLLDAYADAGLLWAKVVGCSVALATALIDRGEWDDVRRLAGFLAGAGEESAAADLRMQLGKAVWETYREQLQGISSTMPPAAIGAAINALRAVLREVPEDFPDRNREVNRFLPPLASAIHVIMKDQDIDLPFTSRVEHIATGGVAKYPDIVTMSLDELAAEFEGICS*
Ga0136449_1002562103	F001698	AGGAG	MAGVINDIEALAEFRAHLMRFNHDLAENFATIQGYWRELGEVWRDDMYRLFGEALEEVTPGITQYLSSTEGHEAHLAALIEQLRGYFETGAGAGLGVSRPETSRGTDRGTSRGTSRGTGRGSGRNGPA*
Ga0136449_1002562104	F002850	GGA	VTSVHADIDALKGLHEALVRYRHAQREVADRGDEEIKVIRASLEAKASRWRARLEQCQAEFGACQERAAQAAADGPPPADGPPPGDGTAAGDGPVDCSGYARAVEQCEERLEQIRHWQQRIDAEASEFQGTASRFGDLLENDLPRTEEHLLALIKSLEAARRVQAPGS*
Ga0136449_1002562105	F004352	N/A	MVTRPDRDGDQQLRLLDDAWDKASQHWLDGMARQFDTGHWTPLRRESRGYLEALRKLMDVLEAAERDTDG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136449_100256210

Overview

Ecosystem & Geography

Associated Families

Sequences