Scaffold Ga0136449_100147479

Overview

Basic Information

• Taxon OID: 3300010379
• Scaffold ID: Ga0136449_100147479
• Source Dataset Name: Sb_50d combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4629
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y
F054526	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_1001474792	F014639	AGGAG	MSEITRLPNTPVSSEAGSDPLFKRKWKSIRFFFDKRAFESKLERILRAAAGHEGNSLPAGDYEYELLSTEADSICTEFADRWGLDADLLRARIPGLAKLEGLAVPPPTKNYARLACLAMVAIPLAFLLMGAVAGLFNVGFHLVGGR*
Ga0136449_1001474793	F025336	AGGAGG	MVLLTLIAAAEATLFSASQAKRYHARRQQVLMGNAVDSLRALPLVDDYLKRKTAGASRVQVFVASKLAEVCRQAVHTRSFEYLLLHVIRTAIHKRRRKLSISHLG*
Ga0136449_1001474794	F013913	N/A	MTFTPSLKGAFASGFLLWVLLWAALFKADEIAAAGGFQRWVSSERCLHWIRNHKSTSLLGTELFNYGTHGISDPMGVTFALAGTLVNVLVIFLLLPMRERAKRGRTALNLQP*
Ga0136449_1001474795	F054526	AGGAG	MSNLQNNPSTPELIEEVIGSGLFSFDDESYFSWQGCEHCADGLGAEVYDLRGYRSLESRELHEFHVCCDCINNQYYGETLTCEQQ*
Ga0136449_1001474796	F020887	GGAG	MRTTITLYGEVAGIIWMPAVECTKEFHLELNRIPRNSTTRTYLGIAPRSMEITCLRDALLHITNDGDFQSCAITWAVLEVSHYSGDETRRARTVKIRTRVWELRGKGPDADCFREESQ*