Scaffold Ga0136449

Basic Information
Taxon OID	3300010379 Open in IMG/M
Scaffold ID	Ga0136449_100096911 Open in IMG/M
Source Dataset Name	Sb_50d combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010379 Open in IMG/M

Scaffold ID

Ga0136449_100096911 Open in IMG/M

Source Dataset Name

Sb_50d combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6084
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

6084

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

1 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.1318

Long. (^o)

11.881

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F057060	Metagenome	136	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_1000969112	F057060	AGAAG	LRFRHARQPGEKPDPKVNFGVEELSARLEHAGVEYLRIALGNDASSFERAHVLLTDGLKEEGPGDGHWYPVIPWVRDDGFYTVCLREPMLYQDACRLFGFDIPAGKPSVPKRIKRDVARGKTSLFGELLETRELNEWDLLHTVMLADGKTTFEVATYNPSNRWPEAWTSGAALASPRGGAILTGHPVKIGDLIQITGALPNGQIKGNCLIWDIDYDLVVWDVKPELRAWQGKIYLSVLNELHGSPANLDVQTASNLDLAKVRDHKLIQFLCQEYACDVFDLMRDDDRVKEEIGFYNPAAWVDEDGNPVINENRWKLWRMYSAGLPAMQFRTCRDAFYRTQMESPENNDPDRFRIRFREPQDLMTVQSNDLAGAAVRRYLFPEPFVFDRRGYPYWDRSTLPDVDSVYLGGFDGEFISLRNPNASHKESGKLRGCKLQHFAAIDRGAVMFVHLGFAASPEGAPGMAKSFNGADFDDSVLALLDPEIVQHWNNLPAYPWVAATPTEVRVIDDGDALFDRNPKARLYDWRYVSCMVQDAKRGQTGIGYVVNAITWFNLLWLHRDSIVAELRRMQPSPQVAEAIRWMEQELPESRMPMVASRLEEIIDALKMNGKSIDWANEVITEFRQSCPVAPKFWWQGGYQSQGRIPRDRIANGNEPIPVTTAMDVAREQWIEMFQKARRFADKESWRNCWQVPPEIRSFPARPEAAAAARDFWMFYNRTREAKKTEFLKAGKDHRGKKVTSEQDAGIAAYLYAEEDVHDRIKASGMYLDIYAELVKLVFDRGLTLEPPRNPDGTVKPVADGILGGPHTLDGLLDIARAAGVTRRHVPLTWESARVREDYGDLNLDIVVEDTLVRIAGSSSNSANWIGIVDLPDGQYRMEHGLVVTRDMIEAPSQEPAVALVAVSEFEQRLKDQKLRQQDRQRIEAELKAFRAQVGNGVTIKPVTYRNPQSQADEPGAEVFLEGTSEPLARISREHVPVVTSELSGVLVSGGPYTLKVLCPLDQGVRPARPLGVKNVPIQIEDDLIPEADYFPTRKSQGPSWEVVNGWQSRINQRKATPSDLQCWKGKAGSRAIIRPTTFVRAGVSEPAVAVYLDGDGVQFGWIAKEHIPAVKREMNGYLAGSGPYTLAFICDQPK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136449_100096911

Overview

Ecosystem & Geography

Associated Families

Sequences