Scaffold Ga0136449_100078053

Overview

Basic Information

• Taxon OID: 3300010379
• Scaffold ID: Ga0136449_100078053
• Source Dataset Name: Sb_50d combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7012
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010891	Metagenome	297	Y
F023510	Metagenome	209	N
F042700	Metagenome	157	N
F071899	Metagenome	121	N
F104335	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_10007805310	F071899	GAGG	MQARVKLTPRIIARLIVGKPVTVNLPADTTSLSLVTEGKFHEFLRAFHAPEEFEPETSHTEVIGLFDLIFGRH*
Ga0136449_10007805311	F104335	GAGG	MAFWEVFGTAVTEDNNAVTFRTFVPAEELVDTVNEALDAIFEIENPEFYDEPETTTNGCFAMAQGLAAVEPPPTVNVHVEVHV*
Ga0136449_10007805315	F023510	GGA	MVKPIDPWLAPGPNSHIFFKVSAVSPNHYGIPPTTFIVEAVNEEAATECVKRAIRMGILLPHGCDGALSPWPTYFQSNALRYLLDGIFVAEEMGTMPTLRFFPDPSIRDEWLRYQLSWRARLVEDLQKLWSAVKARPFFTSWFGR*
Ga0136449_10007805316	F010891	N/A	LLPFKENEMTTKKQLTPEQIAVLNLMVNGAFSSIAIHTIGDRVSKGIHKVADATQFATDKTAYAAGTVQICAIPAAKHMWTGFTGLF
Ga0136449_1000780536	F042700	N/A	MDAQKEAYKLLKEHGEQVRHNKHEAWRINGHLITITKTKTDDRGWLNKLCEIRRCLKTPAEEVYRQARCNGKDRFSDAPAAQHSASCAGPAATR*