NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136449_100025989

Scaffold Ga0136449_100025989


Overview

Basic Information
Taxon OID3300010379 Open in IMG/M
Scaffold IDGa0136449_100025989 Open in IMG/M
Source Dataset NameSb_50d combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14507
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021383Metagenome / Metatranscriptome219Y
F094163Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0136449_10002598911F094163AGGAGGLSDAPEKGLEERLANLERGLEHLKAGLGLLGVKPCSWCGIYYRRSDPGALFDCGELVCFDCVPRWWSHRSPELSANDREKAERELRRWLVSHHHAEVIRRPKDLPKPERLLVKLVTGCEQCNATGKTYAGGLCHHCDGRATVWVVVRAPDFGPSSE*
Ga0136449_1000259892F021383N/AMEKHRDSVRVFSTELPCSGLNDAKEEAKRMVLQSNPALMLQADACFRNRNQVRTKYRCWINERGEFQERALV*
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