Scaffold Ga0136449_100006176

Overview

Basic Information

• Taxon OID: 3300010379
• Scaffold ID: Ga0136449_100006176
• Source Dataset Name: Sb_50d combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34906
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (74.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F036872	Metagenome / Metatranscriptome	169	Y
F055974	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_10000617618	F055974	GGAGG	VVTKIKQGSLVVCLFVFLFVVIGGGLHLNPGGAFLAAATGTPLAIHVFNRRWAGGAAHDPPLSSRNPSSVRHVAEGHEADHTAPLRD*
Ga0136449_10000617629	F000208	GAG	MAMRIRVTTRAGLFEERKQQHIEHGYRIEDERPIPVNGLCSFIAVREIPNADALSELVAQALNGRHGTRGDC*
Ga0136449_10000617636	F036872	AGGAG	MKNAHLRFGWLTYVKSTEKTTTSIKLRLDRFIGEVLPDPPRQAKAHLISVVGGDTQVSAISAAISMGDRFMVEGPGVQPIRVCLERNAQCFKGSIQLRERKKPLRHLIGFSEEFASGNMSVGSGRTLLAGSDQRLVWASIAHIYGIPGIPEWAEWFADELDTHRALIRALGIGCDPVIVKGEKEQFLDWLSWGVESGAISFPAATGSIRWPSLSLKDIFSQPLGS*