Scaffold Ga0136449_100002392

Overview

Basic Information

• Taxon OID: 3300010379
• Scaffold ID: Ga0136449_100002392
• Source Dataset Name: Sb_50d combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56598
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (50.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001083	Metagenome / Metatranscriptome	783	Y
F001546	Metagenome / Metatranscriptome	673	Y
F003322	Metagenome / Metatranscriptome	494	Y
F055949	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_1000023921	F001546	GAG	MMIEAIRWDEKAGLQRDAVRSQVIDALEAQEIKETGNEEG*
Ga0136449_1000023922	F055949	GAG	MTTIGEGYMFGRHAAFRTYETPDHTEALVWYGEFRSEEESKLATELSLKEHRITGTEHIKDLNGHVIGDRIVAAPKEEKKAFIVIRKHGLNYWIIQSISLAVAMQADELIEPSTPLAAFAESPSSCDRSSELLSKQQGLSEEEQKNVHQIRGMVAIVINANGEVVGAKAISASRTHDGNDAGLSAAEAVDVLLSQARSMKFKSRPGCGDFRYVVNF*
Ga0136449_1000023924	F001083	N/A	MDTNQRQIALSVLESLREDLVYAHLNNGSRILDVADLRQYLYEQMGRIRTNVFALVELYGNGKGHGQDVSKSNGHNRQAHP*
Ga0136449_1000023927	F003322	AGGAG	MVCQQLDQLELDFLQARAESRDIDSMGWTDLEFSSLAAILDHKRDGHEGERCPRD*