Scaffold Ga0136449_100002267

Overview

Basic Information

• Taxon OID: 3300010379
• Scaffold ID: Ga0136449_100002267
• Source Dataset Name: Sb_50d combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58177
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (60.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001471	Metagenome / Metatranscriptome	688	Y
F008728	Metagenome / Metatranscriptome	329	Y
F013438	Metagenome / Metatranscriptome	271	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_10000226714	F008728	GGAG	MGSLPVRSHLEKGISELQGLHEVLLHGDLDPRVLADFRDALNRVRTAAWAAQQYVVRKEIDHDSISVLSFLAGERIRAGYQLCQAIGDDLKRTDIKFQAGSLVQLHEATKTLTEQLNGIIKKLG*
Ga0136449_1000022672	F001471	AGGAG	MMKMKVIVAACIFLALALPAFGKTSKNTYPAPCSDLWGAVKDVLGNAENYNVEESNDTLMTAAYKVKHNVHVTVTGAVLQRTNHVSLVSKGTECEMQVKSNYSGFEHDDSGDFRKRVEESFAKLKGSNPAQPPQPATPAK*
Ga0136449_1000022676	F013438	AGG	MNRLYQWLSGRASFFRSDTSGRGTSRTVRTEVTVEQQAMTLLVGSAAAAGFDICPLCGSKLTPMQAEQRSGRLLNSSISQEAGPVDSPPP*