Scaffold Ga0136449

Basic Information
Taxon OID	3300010379 Open in IMG/M
Scaffold ID	Ga0136449_100000890 Open in IMG/M
Source Dataset Name	Sb_50d combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010379 Open in IMG/M

Scaffold ID

Ga0136449_100000890 Open in IMG/M

Source Dataset Name

Sb_50d combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	86970
Total Scaffold Genes	87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (67.82%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

86970

Total Scaffold Genes

87 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

59 (67.82%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.1318

Long. (^o)

11.881

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001078	Metagenome / Metatranscriptome	785	Y
F011185	Metagenome / Metatranscriptome	294	Y
F025538	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_10000089045	F011185	GGAGG	MPRSLSFAILLTFFAAVSTAAQSQDSSAPPPPADTKKPKKVWTNDDIPSAKGAVSVVGDTKSKPKADNSKPADAQYVASVRKQLDKLQGEIADIDKQLVDLKNFSEGEPSTTASGVKLDKSYQREPIEVQMRALQDKKKDLESKIDALLDEARKKGVDPGQLR*
Ga0136449_10000089046	F001078	N/A	MFHRAFIILALLSLALTADAAPQSVVADSTPAIGPAKPELFNRIIANQKKGEAALDLYERIERVETRKNLNDPSPPSIKITRVIPSGTGMVKIPVGADGKPGDSGAYRASLESLARALALLVNDGGSQREAVEKYAKKRKDRDELIDATHNAFLFTFLASEPRSDRMLSKYKMDPNPAFKPTSRFTSIFPKVHGFVWIEEVSGELARIEGEVTEDISVGLFLGKIYKGSHFMEERYEFQPGLWLTSFSQYDFDGRKLFSGFSIHERTFYTNYRYIGPPKEALAAIRQELGHAELDKPHAETADP*
Ga0136449_1000008908	F025538	GGAG	MAQLRMTEGRMRFHTGFLARGGILLAWALTPVMVWADEPKPTPENTIHIQLAAPVPPQKFAKPLKFFISEVLDRSGNPQPMLVLRDRGGVFLDRQPTQIAKETLEESLKAADMLAADAASADLVLQIYVFHFGLAHGSGLDFFGKVEFSVMVKNLKTEESQQIQAAGTSIANAAMRKKNIQKNVQANIEGALEDAVRNLLRGTQLKEAVAALLKDSPNAPAAAPSGEMALVQGYEDKGKSFKSRERER*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136449_100000890

Overview

Ecosystem & Geography

Associated Families

Sequences