Scaffold Ga0136449_100000798

Overview

Basic Information

• Taxon OID: 3300010379
• Scaffold ID: Ga0136449_100000798
• Source Dataset Name: Sb_50d combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 92140
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (59.04%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013877	Metagenome / Metatranscriptome	267	Y
F033558	Metagenome	177	Y
F094245	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_10000079814	F094245	AGGAGG	MCKSKLVAIFFAFFLLLGVALGQSLSEGSVVGLQVEPNPLNGTFVYDFELCCGYPSGPGGFLGNGFAYVEGEFTLLYKYPGAKTSYSFSGTIDTWYTPQAISNYCTIQSGTLKDGEIMLDEKVVGAGLVAEYSQLFCQRDGVYWLGPGGLTVHAQ*
Ga0136449_10000079821	F033558	AGAAGG	MSAHDLRPTPLVPLPLVQFVDRTLEAERRLTEAELRRRDALLEAHVRAEDLRHEVGDAKIQKANEVLDYRLEEMNNFRAQINQERAEYVRREMYDREHDALGERVKILEIVRGEQTGRTAAFASVVAFVVIVVQVVLHFWK*
Ga0136449_10000079830	F013877	GAGG	MKFISEMVGQEIHVELKYCERCGGLWLRPQGSDGVYCVGCRAHLEAMPNPGEPPARKARLRRRVRAQKEGTNIQKDVQGEDLRNPARIESLEGVAAMEVQA*