NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126330_10379639

Scaffold Ga0126330_10379639


Overview

Basic Information
Taxon OID3300010378 Open in IMG/M
Scaffold IDGa0126330_10379639 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-91 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)559
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameHawaii, USA
CoordinatesLat. (o)21.3935Long. (o)-157.7156Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003194Metagenome501Y
F102260Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0126330_103796391F003194GAGGVLRGVVYMTKSSGPRTEPRGTPQEDVYQEDRSVTHLTRKGRDDRYDLNQLRTEPRMPNQDERRAIKMSKAAERSSRQRHDTFCDPDRGCTK
Ga0126330_103796392F102260N/AKVVFIKYEAEVSSRVSGGERGVVDFGKSFTETNEQKFSLRVVQCKQICSHSKRNLI*

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