Scaffold Ga0126330_10039689

Overview

Basic Information

• Taxon OID: 3300010378
• Scaffold ID: Ga0126330_10039689
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-91 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2487
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Hawaii, USA
• Coordinates
  • Lat. (^o): 21.3935
  • Long. (^o): -157.7156
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000002	Metagenome	15118	Y
F000005	Metagenome	10444	Y
F004274	Metagenome	445	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126330_100396891	F000002	N/A	TVLITSLLSSRPTNQKDKTNLDFTEARDSEWQWHQLGHMQVCTSLQTDNHASTAPLSFYRPDALPATQPTASKH*
Ga0126330_100396892	F000005	GGAG	VSRYQKGKTNLDFTEARDSEWQWHQLGHMQACTLLQTDSHASTHHSVFLQAGCPSCCATNSVKALKAKTKKNN*
Ga0126330_100396893	F004274	AGGAG	MVNVHLYSAIITKVSNALNTLVSGEKPGFQTLSKGLIVLL*