Scaffold Ga0126330_10014413

Overview

Basic Information

• Taxon OID: 3300010378
• Scaffold ID: Ga0126330_10014413
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-91 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3629
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Hydrozoa → Hydroidolina → Anthoathecata → Aplanulata → Hydridae → Hydra → Hydra vulgaris (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Hawaii, USA
• Coordinates
  • Lat. (^o): 21.3935
  • Long. (^o): -157.7156
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000017	Metagenome	6504	Y
F004022	Metagenome	456	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126330_100144132	F004022	GAG	MRPRPRLERVRPRTRLRPKNFFEAKAEATMHEAEARRVREQLSVYEHED*
Ga0126330_100144137	F000017	AGG	VPRKDDDDWVKKCMAYKVQGPRPRGRPKRTWREVVREDCQARTINKEDAMDPCKWRRMIKDVR*