Scaffold Ga0126328_10031687

Overview

Basic Information

• Taxon OID: 3300010377
• Scaffold ID: Ga0126328_10031687
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-13 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2720
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Hawaii, USA
• Coordinates
  • Lat. (^o): 21.2608
  • Long. (^o): -157.7866
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063240	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126328_100316871	F063240	GGCGG	MLSWPLTQASTVWRRAGRAVDIGVELAIESGQYSVE
Ga0126328_100316872	F063240	GGCGG	VLSWPFIEVRTVLRRARRAVDLDVELAIDSGQYSVEAGKEGGGT*
Ga0126328_100316873	F063240	AGGAGG	VVLRWPLTQASTVLRRPRRAVDIGVELAFDRGPYSVEACKEGGGYWC*
Ga0126328_100316874	F063240	GAG	LIEARTVLRRARRAVDIGVEVAIDSGQYSVEACKEGGG*
Ga0126328_100316875	F063240	GGCGG	VLSWPLIEASIVWRRAGRAVDIDVELAIDSRQYSVEAGKEGGGYWC*
Ga0126328_100316876	F063240	GGCGG	VLSWPLIEASIVWRRAGRAVDIGVELAVDRGPYSVEAGREGGGYWC*
Ga0126328_100316877	F063240	GGTGG	VLSWALSQANTVWRRARRAVDIDVLLAIDSGQYSVDASREGGGYWC*
Ga0126328_100316878	F063240	GGCGG	VLSWPLIEARTVLRRARRVVDIGVELAVDRGPYSVEAGKEGGRHWC*