Scaffold Ga0126328_10005852

Overview

Basic Information

• Taxon OID: 3300010377
• Scaffold ID: Ga0126328_10005852
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-13 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4767
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Hawaii, USA
• Coordinates
  • Lat. (^o): 21.2608
  • Long. (^o): -157.7866
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000424	Metagenome	1155	Y
F030631	Metagenome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126328_100058521	F030631	N/A	HPVAINVKTGMPPFGILANHKTKMCHNSMKKIMIQKITQNIWNF*
Ga0126328_100058523	F000424	AGG	VGQLVYTLPGGEPVLGVTSLAGEIYLLRDKASEQVEVYDVINFRFRLKRRLTVPNAGDFHDITSCEHNRCVYIGDPVVQCVHRLDVQGAFTRWAVNDSPQGLSVNAAHNVIVACPDVRKIKEYDTHGKLKGELTLPNKVLNPWHAIQTRNGDFVVCHGNAGDPVHRVCMINADDRDIVHSHGRERGSDTGQYNLPLHLAVDDNEFVFVADRDNRRVTLSPTLEHLRQVVIGNQLKWWPSRLHLFLHQQQRLLCVADNEWKDDKYTAGRAVIFRV*