Scaffold Ga0126381_100312021

Overview

Basic Information

• Taxon OID: 3300010376
• Scaffold ID: Ga0126381_100312021
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2158
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000853	Metagenome / Metatranscriptome	860	Y
F004506	Metagenome / Metatranscriptome	435	Y
F008680	Metagenome / Metatranscriptome	329	Y
F009082	Metagenome / Metatranscriptome	323	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126381_1003120211	F000853	N/A	NSIARAGSFAMRNDDRLNIPAEQPRGRTSLDEYGRGAESDCARAMAEIERVLRELALTRRSSPERLSPANEASNAPSLVPAPSPIDRLVLDAGLDFIFHKDGMIELTEAGFRRMGQAHSAGLDTAIEVDRRYLLHYPASKPKFAGADPVKEARWSK*
Ga0126381_1003120212	F004506	GGA	MLTIIKAALLASALMLLESCTDYLTSYQTPCVEGHVCECVQYTTIYRSWLDCRDYGRVKSRAY*
Ga0126381_1003120213	F009082	GGA	MDVGIAVVVAIGLIWSVAVMSNLVPVDGSEMSLAGISRPAE*
Ga0126381_1003120216	F008680	GGA	MTIWSGGAAAGLYLGTGLILAFLVHTHYPGVLGLREWIRVVLSWPLIFFLRSK*