Scaffold Ga0126381_100106902

Overview

Basic Information

• Taxon OID: 3300010376
• Scaffold ID: Ga0126381_100106902
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3587
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010190	Metagenome	307	Y
F017016	Metagenome / Metatranscriptome	243	Y
F067306	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126381_1001069024	F017016	AGGAGG	MSNKAVMQMTDPEYTVEVDGEETYVMRNGVRLAMRRDDRWVSIEPGVTVRDVVENGKHGIEVRMTLH*
Ga0126381_1001069025	F010190	N/A	MVDDDDEIHQRLSNGGRTHFDMDEAFCARMLKAIEAGLENAPIGVVTTPGTKNPRYVPTEPRPLVSSQRDMEHV*
Ga0126381_1001069029	F067306	GAGG	VRTFLITMAGALVLGGCSSHSGGYTRTDGVAVDPLHQQATLAQCKSEGATAGVQVNTGGPIGMVERERKETAIVNACMARNGYIQTPQQ*