Basic Information | |
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Taxon OID | 3300010376 Open in IMG/M |
Scaffold ID | Ga0126381_100102704 Open in IMG/M |
Source Dataset Name | Tropical forest soil microbial communities from Panama - MetaG Plot_28 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3654 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions |
Source Dataset Sampling Location | ||||||||
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Location Name | Panama | |||||||
Coordinates | Lat. (o) | 9.1086 | Long. (o) | -79.8436 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007671 | Metagenome / Metatranscriptome | 347 | Y |
F032091 | Metagenome / Metatranscriptome | 181 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0126381_1001027041 | F032091 | N/A | LDVKYQHSDLFRDILEHVPQMSAERASTVLDYGHQLVEHIWLWTDNIEKYYQRESNPVPRRPFDVRVD* |
Ga0126381_1001027043 | F007671 | N/A | VPPPIDPVGIGLGYTEADLNRLLELAGGGSLCAPEDVRRIIDGYRYLDDWRADYRIQSVRSALHSSRITCIDAAILSYGLLEIVCPQVQRRLLAIHRRDPKSGEEVGHCVALYWAASGRIGAIFKSSFKGLGHREPIFPDETAVASSLAKAYVDMGFQPLYFGVTTLEEAAPDIDWRFHPDALNVLSERLQASYQYGFEVGY* |
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