Scaffold Ga0126381_100021447

Overview

Basic Information

• Taxon OID: 3300010376
• Scaffold ID: Ga0126381_100021447
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7570
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003435	Metagenome / Metatranscriptome	487	Y
F016741	Metagenome	245	Y
F044954	Metagenome / Metatranscriptome	153	Y
F053442	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126381_1000214471	F053442	GAGG	VPIDTSLAVGFLRIVQVRASDPVKAEVRAVELVGSEWSSSAYAFENRGGTPHLTIVRIGLLSWWHRFLGAPSGFMFFAEDGVLMPSDKSFSPGGR*
Ga0126381_10002144710	F016741	N/A	VRSFAGAFTELAFDLSLELRATGRADLARELEACTVKAVSYDPETDVGLIALEPQRQLTAVERNVIGQKLGQVISFADAPYASLQLDNFGRIVAVELVAPPRNLRWILRPASNYRWKRP*
Ga0126381_1000214472	F044954	GGA	VFLLFAAPVVILVFVLAVPVAYRYLWPIKINRPQLFLVITLVMGLVIAGVAIFWLFSVLTGMGNTGATSQTAPTAAVESVLRNRLLVAAVFAVLVEYLLCRITHTIMGT*
Ga0126381_1000214475	F003435	N/A	MRLTPETPALRRWRLWLGAIIVAEICWFALLRPRIESYRTVLVLALLPLTVVGYVYLMAAVSAHLADRRWDFRLRQMIVVMLGLSVGCFVFSLLWLAKVHFAAEVG*