NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126381_100008849

Scaffold Ga0126381_100008849


Overview

Basic Information
Taxon OID3300010376 Open in IMG/M
Scaffold IDGa0126381_100008849 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11278
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022093Metagenome / Metatranscriptome216Y
F053597Metagenome / Metatranscriptome141Y
F087658Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0126381_1000088494F022093N/AMRVEFSRGIRPDSPRFVLMIEIPDGVAANLRARKLSLETKAYEVALETTHADRSNKPEYHMGLISCTKGKVKNLESLGEPSLLAQDACRAWIIKRPSPLQELNHRGR*
Ga0126381_1000088496F087658N/AMPQALYFQITLEPHFKHSGLATGRKILFLAEVPVSTAKVASEAPDDDKDVYKTAERLAANLTCMAMTGEAHQPGEDEMRISFHSLPRMANDITESHPDAEKDGARVWLVGAVTE*
Ga0126381_1000088499F053597N/AMRTSDKKTTTLMRFFLFSSLIALAWLAVANLPESFAAPNPDKSGKSNFSGTWTLDLQASTSLEPLMNQIGAGLLDRKYASQTELKATLEQTDAELKVATRGPGFALDETLYLDGHNDQNKIVLLGATSISARTAWSKDYKQLVETRQIKTKQGKEGQLIIKRSLMDEGKTLVISFILKLNGEPDQTSPRQIWRRES*
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