Scaffold Ga0126381_100000442

Overview

Basic Information

• Taxon OID: 3300010376
• Scaffold ID: Ga0126381_100000442
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45406
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (46.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000411	Metagenome / Metatranscriptome	1170	Y
F003294	Metagenome / Metatranscriptome	495	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126381_10000044223	F003294	GAGG	MRRKMVGFAILIIICAGVRSAMAGEKIDVPKVITKSDVEKILGVPVKDAKGHNKNGTGGYYESEWSYRAIEGDKGIYFDVLYAGQDAPPHLTQTMFSILPADNSKSTPVDGLGDKAVFCPNETGMAMLHVLKGDILITIGFHGHIGEAALDSEKAMATKILGNL*
Ga0126381_10000044229	F000411	N/A	VSRRALQIFLLVAMSLVLSGMLSRGELSTGNTYSISFVDIDGNKHSTADGRVTIIVLTTSADREQARAVGDHVPDFCLGNPAYRMITVVHFTGQHMALGRRVATAFIRHRVREAAKRLQARYDALKIWRDAKSDMFVVTDFDGSIASQLGQPAGATDFRVFAFGKSGELLTQWHTVPTTDALAAAITKSD*