NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105239_10306006

Scaffold Ga0105239_10306006


Overview

Basic Information
Taxon OID3300010375 Open in IMG/M
Scaffold IDGa0105239_10306006 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1790
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031114Metagenome183Y
F070516Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0105239_103060063F070516N/AMRKKSELHYELYGSSGGAEKKGLWRWSIYAGREKKPLLVGSFYGALPDAKKHAEAAITRLKERIRKHRATTKKCP*
Ga0105239_103060064F031114N/AMQRYLFELLYENEKPMTLAAIRHAAAGEDFVFRFAVERSLRRNLKRMVDNEIVVANGDRYCIHSRILAIMADGMGK

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