Scaffold Ga0105239_10005642

Overview

Basic Information

• Taxon OID: 3300010375
• Scaffold ID: Ga0105239_10005642
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14626
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044761	Metagenome	154	N
F049057	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105239_100056424	F049057	GAG	MVLASCLTILSVLLALGIGIRVMLQNDYRILANLRSSTHSFYYSVAGIEWSKNQIAELDIFPPTPADQIQSFANGAFDVRFSVPAVTGPLTARLTVRSTGTVDNATHVIEAQLTKAYELSDAALTVRGNPARAVLSGGEILISGTDHDQTNGTPRSGAKPRLAISASSETVRGLLSQSIENPEILDGASLAPLVAQSDYLPANFINQLAGDLCSVPTALLHPISTIGSLTIANQIWGSQSSPEIHCVDGLSVSGDSITITGNVSGAGILVVSNADLVLSGSFHWQGLVIVNGQEVGLRTAGSSIKEIVGAVVLNETGAPSSTTAIMEIQGNLRLLFSREALKTAAELIPASTLTRAYGNLPFLVTQNYWRNVAQ*
Ga0105239_100056428	F044761	AGGGGG	VRIPLAAGVVLTIATTIGNADAGYLIQLRNGNDYVTARYWREGNQILFDTYGGVFGVEKNFIAQIIKTDDVAGLNSASYREPATNLLNRGLNDKKELRDNGSDPPLSRTKADDNDPIRGEFNRLKEKVSEVDGMLTAEIRELLNQITAFKNKLSRDSKLFIQYGREFNDAHELGSAVETALVSRTQ*