Scaffold Ga0114986_1007085

Overview

Basic Information

• Taxon OID: 3300010374
• Scaffold ID: Ga0114986_1007085
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2357
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F040479	Metagenome	161	Y
F055450	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114986_10070851	F040479	GGA	VNPASTTLLAQETLRANQLAQLSELLNCLESVVENLNYKSFTVYDTLTTAIQGVRVALSDIATDEGGTDTI*
Ga0114986_10070852	F055450	GGAGG	MKASEKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTVPVVGVRVRTAEGRGAPVIKENIHRSTDQGNDGGEA*
Ga0114986_10070858	F005558	AGGAGG	MTTDQDSMSWAELAELTHATQVERFNFCMCEDTEPHEHPYDDCPKGA*