Scaffold Ga0134128_10001957

Overview

Basic Information

• Taxon OID: 3300010373
• Scaffold ID: Ga0134128_10001957
• Source Dataset Name: Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25911
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Kellog Biological Station, Michigan
• Coordinates
  • Lat. (^o): 42.3938
  • Long. (^o): -85.3708

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006445	Metagenome / Metatranscriptome	373	Y
F065097	Metagenome	128	N
F068110	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134128_1000195718	F065097	AGGA	MPNHPNTDENESASLDAEDWEIALKPYFGYPDAALDLARNLMTIRECLKTTPPDLPTAVAALNEAADSLFPLTSFHEGAHDLYRTYIEGRATRAHEALMQSLGVKF*
Ga0134128_1000195719	F068110	GGGGG	MHTSDKNSVLERRAAMMARLQQIHDHAAGEGTAEGAMIVTLEGYISGIPEFFTNDCHEAFRFRDRVQAESFVAEFVGTLLNPQVLDHP*
Ga0134128_1000195720	F006445	N/A	MKPIMTDDLLDQVSRIYERARGEVLTLLRSHEPAVHSVIPPREWMSATQLAEYWQLYNENDEPTTAGILKWAKRPADKFPLPHAYMGDLLRFNRDEVDQWARQEAERRRAQAEKRRLKIA