Basic Information | |
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Taxon OID | 3300010371 Open in IMG/M |
Scaffold ID | Ga0134125_10060815 Open in IMG/M |
Source Dataset Name | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4202 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Kellog Biological Station, Michigan | |||||||
Coordinates | Lat. (o) | 42.3938 | Long. (o) | -85.3708 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011259 | Metagenome / Metatranscriptome | 293 | Y |
F023966 | Metagenome / Metatranscriptome | 208 | Y |
F042033 | Metagenome / Metatranscriptome | 159 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0134125_100608152 | F023966 | AGGAG | MNDQNRVLIRKGARELTEQEVDAVNGAFKVNHTLTPCFIDKKQQLLNGDQSIGECG* |
Ga0134125_100608155 | F042033 | AGGAG | MNDQNRVLVRRGARSLNEEEIERVGGGLHTETLCTVPSTACPNKDGDASIGECGPIC* |
Ga0134125_100608158 | F011259 | AGGAG | MSRQEDNRVLARKGARELTIDEIDQVSAAMQAHTNVCTAIMATATATGSGDGDGCSDTDKDSNFI* |
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