Scaffold Ga0129336_10092484

Overview

Basic Information

• Taxon OID: 3300010370
• Scaffold ID: Ga0129336_10092484
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1777
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F011753	Metagenome / Metatranscriptome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129336_100924844	F002009	GGA	MNPPTIEELGKAAEDIVWRVMGKGSEKSAYGEWFYVDKPVHDYHIGRAMRHLSTAMLQLQKSTPCPDNQGETATDHLERAVVRALFAWAQVKKELPRL*
Ga0129336_100924845	F011753	N/A	CERALVGAGYAGRCDAYVRLKRIGDAIIDLKNRKVNPKYDPFYDSDCAQLWAYRIASENPKAACVSVVLAANDPETLVIHQWSEEELHEAGIAFNAMLKVWAWSKKYNPPGMKL*