Scaffold Ga0136643_10124731

Overview

Basic Information

• Taxon OID: 3300010369
• Scaffold ID: Ga0136643_10124731
• Source Dataset Name: Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3123
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000032	Metagenome	4750	Y
F012230	Metagenome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136643_101247311	F012230	AGTAG	MAAPLATCTKEEQRSVIRCLSSEGVKPIEIHRRMNVQYCDACLSLQQVYEWTRKFMNSISSVTDSPRPGQAHPVVTPESIAAVEDIVKDNRRVTANEIAAHLDMSHGSAHRIVRDNK*
Ga0136643_101247312	F000032	GGA	MEKISWTDFVRNEEVLLRFKEQRNILHEISKRKANSFGHILRRNCLLQRVIEGKIKRGIEVTER*