Scaffold Ga0129324_10036735

Overview

Basic Information

• Taxon OID: 3300010368
• Scaffold ID: Ga0129324_10036735
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2305
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.0754
  • Long. (^o): -76.1533

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010473	Metagenome / Metatranscriptome	303	Y
F043091	Metagenome / Metatranscriptome	157	N
F095051	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129324_100367351	F043091	N/A	MELTEKKLEKISGAILSSFINLHLLEDAEKIGLFRQRVRNNIRRTINDLKEIEINYYNKIEEVDEKELGDKLTANKLIFLDWVLNKFDFNDFCKIQEVCLAYEADKERITQVTDEV
Ga0129324_100367356	F095051	N/A	MNTFTITFKNGLGEFKTEEITLDFVTVRAAIDWFEETFGLKVKSMSKH*
Ga0129324_100367358	F010473	N/A	MNLIRYEVKAGFFKGFLFGVRHYPFDDEEMYEEDIVLYIGIFQIIITLIYEK*