Scaffold Ga0129324_10015003

Overview

Basic Information

• Taxon OID: 3300010368
• Scaffold ID: Ga0129324_10015003
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3954
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.0754
  • Long. (^o): -76.1533

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F065673	Metagenome / Metatranscriptome	127	Y
F100727	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129324_100150031	F065673	GGAG	MTDQEIEQEVDRQKEEAIAKHMSDIKVMSKLIASIDEYIIRFGRTSKVHDQCFDLKAQVIKNRDHLQDWMNQI*
Ga0129324_100150033	F005751	N/A	MSDIYTIEFEPSKLSYQQEELGMRFGDLDTAVELMKKEEKMIIAELTVYYSRKGGYKNMTELNGLIYSDAKFKDYFDRYERTLRERNRSKIRFESFKAFRDDLRTKVVNERELAKHL*
Ga0129324_100150038	F100727	GGAG	MINPLERKRETYLTFYKDGIHDGILNQKINPDKKFSAYYKRGFEKGLEIRKLIEEYGIDNIGADNE*