Scaffold Ga0129324_10001013

Overview

Basic Information

• Taxon OID: 3300010368
• Scaffold ID: Ga0129324_10001013
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18937
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (31.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.0754
  • Long. (^o): -76.1533

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074501	Metagenome / Metatranscriptome	119	N
F081740	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129324_100010137	F074501	N/A	MVFTPSPVDRFKIYRIIFNKKELIMDKKIKVQVPSTSSDYFIDVDLTEKQNNFLNKFNQIVDKKLYDIFDSLIEEIASTPEYKNVDKFELFQLYYDIPGSIWSGAALTTLLPRFYSKKIKPKN*
Ga0129324_100010139	F081740	N/A	VNKFDQLYKKYEDLVSDGTFDGDARDKVDTILQMIYDTDDLPSGIYQSLKTDEEKDIFLKDFANACDEMMKNPVCDTDDDYKAISEQVKMFR*