Scaffold Ga0126379_10307639

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126379_10307639

Scaffold Ga0126379_10307639

Overview

Basic Information
Taxon OID	3300010366 Open in IMG/M
Scaffold ID	Ga0126379_10307639 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama - MetaG Plot_24
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1594
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000142	Metagenome / Metatranscriptome	1937	Y
F033021	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126379_103076391	F033021	AGGCGG	MSVAVAVAFVVVVLVVGGLLAYAIYQWGRQHAVSTKTRAELTTSEEYRRLSEMAITAQEHTELKLGEINMQLAQLRDQLDQ
Ga0126379_103076393	F000142	N/A	VDDRVSLARGAVLPTTDGTDAGEEHKMSKAADSTEPASALEHLIADLSASGPLIFVFGDGFTTAHLTGTTTPVFRGPADQRWWHVTLGDDSASWTMDVRVDQITGVRFVREPYPFVPHFPGHEVLVVQFLGPGEETVLHCYVDDLYDGRRMRPEKLESWRALRERYGNRDESRVDRGTLMAPAA*

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