Scaffold Ga0126379_10013407

Overview

Basic Information

• Taxon OID: 3300010366
• Scaffold ID: Ga0126379_10013407
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5871
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031594	Metagenome	182	Y
F053711	Metagenome	140	Y
F071508	Metagenome	122	Y
F092511	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126379_1001340714	F053711	GAGG	MAMRTPTEQVEGLVEAVNPKGLKIAGQWVNVSQFRPVELPETGSHVRLEVDSKGYIKELEVLKTTDRSPAVLSDKDERITRLAVLKAAAEFVGLWGQTREEIKSDHVLLIADKWLDWVNKA*
Ga0126379_100134072	F031594	GGAG	MSVRPITFNPDGSIDVVFDETGHSGTIPAAEIRWTTGIDGAENHNYIVLNCPDGCGANSTHPVGGGAAPLEVQQMFVEKTQRDGCACGVCAPNDTTGLPESHVRLNVNRLDGPGRWQLG*
Ga0126379_100134074	F092511	GGAG	MTDISAYSDDQAAQITQLQQQQSLFTQALKAAVEGHWIGAGSVEALLYALDPNMQGTVSPDPPVTESEYDADQPPKA*
Ga0126379_100134075	F071508	GGA	VSWDPNWFMPLQAYDWTCSVCSTTWVLQATDTAYQDADIYDARYAVGTEMGYPSCVNETYGCMSPQCVVDELARYGLIARLAYVTFDQAYAIARTNTGTINPQGMYHFMGIRGISGSDIWVANSANPGYMGVYDTLSRSQFNALGPVSIIFVESRA*