Scaffold Ga0126379_10006669

Overview

Basic Information

• Taxon OID: 3300010366
• Scaffold ID: Ga0126379_10006669
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7808
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001327	Metagenome / Metatranscriptome	721	Y
F051616	Metagenome	143	Y
F104208	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126379_100066694	F051616	N/A	VTILLYLVALFLTVATVWLLSLFLYTTQTKQTDPQSVWVLVIVGIPFVMLIYFGFAFLISDTISDGTAWLTARKEELSFSESVVLAVSYVGLSGWLLLRWRKPTGPPTRILGAIIATVIIVIIVGVIWNAHHDHIF*
Ga0126379_100066695	F104208	N/A	MRLGGLLIKINSQSRSAHIMRRPRFTHPVTADHRREIDIRVLTKAGAFKRPMRFPFQRIETARDHITLFSLGNRQRPPQIIAVQWRPMTFGRKPFFICPRCHARRVFLYFDTLQAYCRVCADLWYWCQRKHRRTRLLHRSHKLRLALGDQFGKPGDQFPPRPYLQKRTRYRRTIAALKHIEQQYLNIIATDRRYLDRERDELGRYLPREPNTNDPSADDLGA*
Ga0126379_100066696	F001327	GAG	MSGRVNWSRIKQRSLMRRQGVEDIRGATSVAISPPKQPRRKLSKTELRQQAAAAFLAWRAGQTKDK*