Scaffold Ga0126379_10000095

Overview

Basic Information

• Taxon OID: 3300010366
• Scaffold ID: Ga0126379_10000095
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41307
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (75.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035917	Metagenome	171	Y
F045266	Metagenome / Metatranscriptome	153	Y
F045919	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126379_100000953	F035917	GGAG	MSEQPFQFQVVYVDPGDGLIVGMEPSGGAVGSAHKVAVLFDQTEYDTLMRTDPAYLSSDKNHVLGAPDHS*
Ga0126379_100000955	F045919	GGA	MPGQLYDWTCSACSLEWVKRATGLITASDIYTSRESTVYEIGYPQNINPQYGLMNADGSALRAVLQTYGVSTDQGWLDFDTTYALAQDGTGMMSGAAWYHWVSIRGVQGNTLWVANSAPGYKGIWDNVSRDDFARLGGFSVVWLV*
Ga0126379_1000009554	F045266	GAGG	MPGGRPYKKPVSRAQARFFGAAAGGGVPGFDPKEAQQKLKGVKESKLPARKSKGGKKNA*