NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116251_10128344

Scaffold Ga0116251_10128344


Overview

Basic Information
Taxon OID3300010365 Open in IMG/M
Scaffold IDGa0116251_10128344 Open in IMG/M
Source Dataset NameAD_USDIca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1638
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA, Massachusetts, Boston
CoordinatesLat. (o)42.35Long. (o)-70.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078673Metagenome / Metatranscriptome116Y
F105113Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0116251_101283441F105113N/AMKYILAVFASLFFVLLICSLPSHAVISSTMYSNGGSVIVNTDESWETSNNLLRFGTVNDSYEYGGKSQTIVSLGRTGIMKQDSTKVETLGMLNAFDSAGMFSTQTNVPETICDASDFIAGYGGNNSDSRYPETQTVEGL
Ga0116251_101283446F078673AGGMKIDVETQCIIARENGEQVVVDDVSSIAIVIELMGQKYNIFKTMDELILNGRWK*

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