NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116251_10120862

Scaffold Ga0116251_10120862


Overview

Basic Information
Taxon OID3300010365 Open in IMG/M
Scaffold IDGa0116251_10120862 Open in IMG/M
Source Dataset NameAD_USDIca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1707
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA, Massachusetts, Boston
CoordinatesLat. (o)42.35Long. (o)-70.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036250Metagenome / Metatranscriptome170N
F058178Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0116251_101208622F036250N/AMSKRISLKDSYSKLYKLLTNYTYQQAVYFREDNPFLNHTRINPAVSKAVFWIKPPTIEALPAEGLHWRVPAIVAAGNLTTVLTIIDDFINNYSQASYWRNIRPLPASEIGIWDGWEAVAVDLFIDWNHICETEL*
Ga0116251_101208623F058178N/AMKLEWIIDELRVELQKQQHIASGAMAASLRIEKDENDYVVTGLNYSYWVNFGRAAGKRPPIAAIANWVNIKGLPKEAVWPITISIGNKGTPGQPYVVWEEGNKLKRTEFIEDTITRCKDRITEDLAAEWQAIIFEKFKNKILEK*
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