Scaffold Ga0116251_10119371

Overview

Basic Information

• Taxon OID: 3300010365
• Scaffold ID: Ga0116251_10119371
• Source Dataset Name: AD_USDIca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1722
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA, Massachusetts, Boston
• Coordinates
  • Lat. (^o): 42.35
  • Long. (^o): -70.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029451	Metagenome / Metatranscriptome	188	N
F062734	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116251_101193713	F029451	GGAGG	MVVDFEDLIASTSSSAGKPSIIEALLSTVDTIFTNNRMLQRSRLSSRNIRGVVRVIGSQAFLRARLERSYKPFLDPDTGEFTYNRYDNRVLTAVCEGALSGRISLDGKSRDEIIRIFQAVGNTGQEQPVGRGGGVLGRFDY*
Ga0116251_101193716	F062734	N/A	TVFINGIEIVSGYPGTVLSTDAEPGRQYTAVVMDWKYNQSVADATVTGEYYTYPLWVWLLFAALVACLLISIWLPYAAFGAAVAGGFLLLLVAPNPDYAAYLRIFAGAAFIVGLAGLAGRLHS*