NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116251_10010969

Scaffold Ga0116251_10010969


Overview

Basic Information
Taxon OID3300010365 Open in IMG/M
Scaffold IDGa0116251_10010969 Open in IMG/M
Source Dataset NameAD_USDIca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10467
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA, Massachusetts, Boston
CoordinatesLat. (o)42.35Long. (o)-70.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051988Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0116251_100109691F051988N/AEEGYNGNTMNQLDLSVNALNGQFTDYRSRVDLFDAYLVDVEAALAQKAVKGVNITAFIAGAKAANQFQKAGMIGKFEKNTKISYISDLIGWYDGIPVLRSTDINESANGGKAVFYAIHKTPDGQMAPLARGIFMPLTDTPTVGNYANPTQMAAGIYYQEGIKTMANELVQRVEFAAGI*

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