Scaffold Ga0126377_10023453

Overview

Basic Information

• Taxon OID: 3300010362
• Scaffold ID: Ga0126377_10023453
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5115
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085973	Metagenome	111	Y
F090036	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126377_100234533	F090036	AGTAGG	MPDWLTIEDVAGYLDLPTADPADDNLVLSTAAIKAAVEGRRSDLWTGGDPSATPPVAAIFTPTDNVRTGAILWASILYQSRGAPSGFAGYGDETQLFDPLGARRAEVLRLIGWRRPRAI*
Ga0126377_100234534	F085973	GGAGG	MSVVQATEGTLARRNLADRLAAVGIEASTDAGSFYPTPLGVLIGLPSLVGRGLASRTFEVPVLVVSGDPLNDELVVDRVLVVADAVALALSTNSYAPSSWRSSSNAEPLPAFELTVTVTIEEEA*