Scaffold Ga0126378_10037307

Overview

Basic Information

• Taxon OID: 3300010361
• Scaffold ID: Ga0126378_10037307
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4417
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004357	Metagenome / Metatranscriptome	442	Y
F023965	Metagenome / Metatranscriptome	208	Y
F058483	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126378_100373073	F004357	GAG	MSTPDSELAKHLQALFGGLDTSAGFDARLMARVRAESRTDAIEAARHARQQERARYRRAVLELQHSRRSMLRLLTLDTLGIALLLVAAVVTAGPRLSREVMEISSQYGPYVAMLLGVLIAAVPLVGMWAEQTRRPIRLL*
Ga0126378_100373076	F058483	N/A	MSDSLSAALIGAIAGYLIARHGSEIEWILRTLIG*
Ga0126378_100373077	F023965	GGAGG	MNARSIPVSRFSGRHTASGAAIVMALFGIVPVGTIADQRAATTTLSSVAEVTLSDLNLSTPDGMRLARDRLHAMAERLCADRGGGREPSSRPAFGACVDSTVANALRHIDALRQTQLTVLNSVTLGAGVPLADLDLSTLEGAGIARQRLDAMARRLCGELARRRDVSYQPNYAACVHDTLAGALAQADAIAAARSTRTARRTAP*