NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126372_10657337

Scaffold Ga0126372_10657337


Overview

Basic Information
Taxon OID3300010360 Open in IMG/M
Scaffold IDGa0126372_10657337 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1016
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014924Metagenome259Y
F085833Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0126372_106573371F085833N/AVSSYLLLALAIFLVAFDFQNLRSWGGGQTIKPGREKSQDFTIVVPVFGHPRYFEAERLLQIRHKVLVAMEI
Ga0126372_106573372F014924AGGAGGMQSAATRGFTVVTVVTLIFTPVWKGKHWVDVLTGKKTETTIVKCQPSEPCPAHKHVTQKSVLPHP*

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