Scaffold Ga0126372_10106537

Overview

Basic Information

• Taxon OID: 3300010360
• Scaffold ID: Ga0126372_10106537
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2125
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023220	Metagenome / Metatranscriptome	211	Y
F088430	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126372_101065373	F088430	AGGAG	MNNGHASLTRVYTALTGSTVEENAPNQPDVGEPADADFDLFVEAAAGNGIGNSSIPYTLTITGVNETQQAVVPALGSVTNQAFNAANGWNSSGDDFVKTQRLTFQLPLPAPNTPNDLYRFYVSLVTPNLQIASFAESNLFILL*
Ga0126372_101065374	F023220	N/A	AAGSLNFTRAVISTVDSDPTTGDRWFARNVNPAFPHATAFLGDYSNIAATADGGVVAYWTDMRNDATFAGITRKGEDAFFAKAG*