NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126372_10046882

Scaffold Ga0126372_10046882


Overview

Basic Information
Taxon OID3300010360 Open in IMG/M
Scaffold IDGa0126372_10046882 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2889
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001643Metagenome / Metatranscriptome659Y
F020070Metagenome226Y
F048483Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0126372_100468821F048483AGGAGGMCSPMLTVQAAQNSALLVHGTCCDICSPVHEKYEAEFNPLHMDWVLVDDTKGNPRAQRRWMVEG*
Ga0126372_100468822F020070GGALKSDNLGPQHIPVRISESHSQNGTRTLDKRSVEIRRTDGHFEPYQEIEKETLTVDASTVRITMRTFARDVNGRKALVQVTEEEKHASPEGDANVVRITSNPDVNGRLQPVQREIVETKKIGKDLEETNTTAMLPNANGGLAPAFKTHALRKRAANDTVETETTTWLLDVNGKWQLSEIRQATTRQEGTNRTTEERVSRLGSEGKLGEVSHVVSKESESISGEKRSFVETYSIDAPGTTRDGSLHLVERKTSTANSSSTGEQTTDQKVEQTNPGDPGAGLRVSVLVDGRMVPGPSEEQSTVTIRARDSNGNFGLVSVNTTKSDRIPTIQVQQTPAEKP*
Ga0126372_100468823F001643GGAGGMLGELMNIPTETLTDMLYIILAGEFAVTANDAAEVEQIQRELQRRGSEQRWSFQTVN*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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