Scaffold Ga0126372_10002828

Overview

Basic Information

• Taxon OID: 3300010360
• Scaffold ID: Ga0126372_10002828
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7740
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011441	Metagenome / Metatranscriptome	291	Y
F053003	Metagenome	141	Y
F071916	Metagenome	121	Y
F088377	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126372_100028281	F088377	N/A	LKIEGSRVVAQPSAQGQRNSKLYHVKVEIDASVAGQTSTYVFNCVRDGQLTIVQPIGMR*
Ga0126372_100028282	F011441	GGA	MGLDTGTVFKRSILCPHCNEDYLFTLRAIADSPELKCHGCGGSIRLGDSVYKPLLSEVRNTLEAVDTAQLTPTFVSVHSSSPSNSLP*
Ga0126372_100028283	F071916	GGCGG	MGADMKSHFRAGAKVCSMAIMVLLVIGALGPPNWTPRTALGWQIDHFVGYFAITLLVCFAWPRPFLVGGLLIAAAFLLEGLQAFTPDRTANLVAALCGAGGAVAAALLAELFSRAWRWHLKSAREAKSRF*
Ga0126372_100028284	F053003	GGA	MALDAGTALKRPVLSAPSDEDYYFTLPAITASPKLKHRLRAGAKAFCVPIVVLLVVAALGPEKWAPRTHLGWQFDHFIGYFGITLFVCFAWPRPFMVGGVFAAVAALLEVLQAFTPDRSAYLPAIFYGAAGALAATLFVEFVIRVWRWRLKVNVRQARSKSLAFTGSPNPA*