Scaffold Ga0126376_10130929

Overview

Basic Information

• Taxon OID: 3300010359
• Scaffold ID: Ga0126376_10130929
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1975
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005602	Metagenome / Metatranscriptome	395	Y
F064300	Metagenome	128	N
F085448	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126376_101309291	F005602	N/A	FFPAAFPPFSRRSHVPNQGVVKRDWVATGRIDFATPVTRVTTNPEDIDQPTEFKLLVEERRIVESIAGNENLEIQWRLATLREAKAVITQYHKYLSDNRLIKTVFDETTSSPPPVMTQGHSSGDAPDDTDAPGRQSNAARS*
Ga0126376_101309292	F064300	N/A	LLQATKAFIDQQLDRAVTAVPVAVRFLRRIDATVVQWQEHLRSFLPLLGTTISRRTALTFVAAGMRRRIDAILPHGELVVRTVRQLLGNLRPRKATLTLVVAGLVGLVLILILLLEISLRMELAKEASDAAIDVTSAPSARPQKMEFGDAFPTQPTGSILLQSVEQLPGAQPSPDYGQTFGQVFQEPVPLPRSRKRR*
Ga0126376_101309293	F085448	GAG	MGQAAIYNAVNRPGLYSSKARQGPHPGPAVIRAGNHLAVACLFFGAAFAAFVSGSLEQRIGNLFSVGVIPAVGFYAGGHILGQLLVFGVQLCDMIMARCFRYVVRLLNDLLSSPGTHVSNWLTGRPHQTKRAELTPDALFAADSRNSHFSPPMT*