NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126370_10645082

Scaffold Ga0126370_10645082


Overview

Basic Information
Taxon OID3300010358 Open in IMG/M
Scaffold IDGa0126370_10645082 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)921
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002770Metagenome / Metatranscriptome531Y
F003044Metagenome511Y
F004064Metagenome455Y

Sequences

Protein IDFamilyRBSSequence
Ga0126370_106450821F004064N/AWVQEVDSCTELRFRSGEELLEFIAQTYELTVARYAELHPSGRTEQAPCGKRNSHKGGKLK
Ga0126370_106450822F002770N/ALLVVSFATECVYLTYGKEAPGLVPIARNLAWNDFITQIRFLPEDSPQDSINKEMLIIQRFLKQHETETSAGVYDLAVFRAIDHVRARLHKADKDLETLRNELSCKEAQAQQGR*
Ga0126370_106450823F003044GGAGGMRFATCVHCSRCQQPIVRGERSASVSFKIPGKEGYHFFHCRVRGDCWEAYLREGRTA*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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