Scaffold Ga0126370_10068208

Overview

Basic Information

• Taxon OID: 3300010358
• Scaffold ID: Ga0126370_10068208
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2340
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011858	Metagenome / Metatranscriptome	286	Y
F047168	Metagenome / Metatranscriptome	150	N
F077471	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126370_100682081	F047168	AGGAGG	MAIGDGMLAQVLLDYLQQHAEEFEQFLLERAGIGEGYVRWRGEETHKRLVLKVTTLGSGPSIV
Ga0126370_100682082	F011858	GAGG	MAFVFHIHTAPSCEPTHSPSCASIDGSDWDHSCFQIASGRNRGKFACVHRNPQGLSHEDEIFISDLISLHIFARGQGGYAKENRP*
Ga0126370_100682083	F077471	GAG	MRHPSRIENSVALVETIVDHIFSDHKAISLYGVKRIDVSYDVWVEYEGQKITVQSLTREIILHCTDPDEDTAIKFQSFIERCIRQGMKVLTPDVS*