Scaffold Ga0116237_10034629

Overview

Basic Information

• Taxon OID: 3300010356
• Scaffold ID: Ga0116237_10034629
• Source Dataset Name: AD_USDEca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6173
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 39.84
  • Long. (^o): -89.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009968	Metagenome / Metatranscriptome	310	Y
F011593	Metagenome / Metatranscriptome	289	Y
F051949	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116237_1003462914	F011593	N/A	MGYRGVYPMSDIQPPEYCLGCRHPIYDDRKSEWDWYCRQWSPTGILCTNVAVLRERCHRVRDYFARKGAIQ*
Ga0116237_100346294	F051949	GGAGG	MFAHAGTARLDFFTDSLLLEVGEDLFLARLSRLSPLMQGRTAYCPLSRRYQGTAGHYCDVEQGIGLRRSKPGAALIFVDRGTIYSIPVVELREVLHGVRSECGISRVLTTEARMMEVEA*
Ga0116237_100346296	F009968	AGG	VNSCIGCRSHYRERHWWIFEIDFCGLDGDVVGFECPIGCIDTEGCSAYERRPAWPEGAIA