Scaffold Ga0129333_10418690

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10418690
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1183
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015209	Metagenome	256	N
F015472	Metagenome	254	Y
F024112	Metagenome	207	Y
F056602	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_104186901	F024112	N/A	MAYTIGVRKKDMEITDYDKERATVLNAFYCSVRSAIQAENVHNNHRIEWIEDDFMVCKKKLEAIEAEMRVLLGDPFAE
Ga0129333_104186902	F015209	AGG	MNNYRHKALSLWSALLAEERWHKFESTNCKPSCKGWNGWAPYCECFENHCTFIAKGDIDDMELVIVAKPIDDVLRNIQVIP*
Ga0129333_104186903	F056602	AGGTGG	MSNWTKGFIGVAIASQVILFVILFGCKAGDAFYISGVDLFGMAMSSLCSLVYIPAILVSYDSDKVQKKLDEQLQA*
Ga0129333_104186904	F015472	AGGAGG	MAHYYLNQGGTRWVCDNKIQVTGDYKGKTYDRMRQPMFWEAFGNFALCYVRVGRTVFCGFTEDNNGVIQLNLGKCKVVR*